PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0085s0014.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 436aa    MW: 48917.3 Da    PI: 9.6142
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0085s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP55.11.3e-1789146971
              E2F_TDP   9 ltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          l+ +fl l++++  + v l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn+++wkg
  Kalax.0085s0014.1.p  89 LSCSFLGLYNREGVQSVGLDDAANRL---GV--ERRRIYDIVNILESVGVLARKAKNQYTWKG 146
                          7889*******999************...**..****************************98 PP

2E2F_TDP771.8e-24215295171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          r+eksL+lltq+f+kl+ +s+ + ++l+++ak L+ +      +++k+RR+YDi+NVL ++nliek     ++k+++rw+g
  Kalax.0085s0014.1.p 215 RREKSLGLLTQNFIKLFLCSNMKLISLDDAAKLLLGDghgstIMRTKVRRLYDIANVLISMNLIEKthhteNRKPAFRWIG 295
                          689***************************************9************************999999******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013729.9E-1687146IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.2E-1988147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.4E-1588146IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.5E-1289144IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-23211296IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-34215295IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.9E-19217295IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.25E-14217296IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVGNVECELS RNEIDYTIKR KRISVTGKNG SVFVDSAGLG SYAERLQSEA EVTRPALLQV  60
ISIPLSTLSL LKFRSIERGP DLLLVSGFLS CSFLGLYNRE GVQSVGLDDA ANRLGVERRR  120
IYDIVNILES VGVLARKAKN QYTWKGFGAI PRALDELKVE GLKDNHSFSD GNDHGKQYSD  180
DEDERYSSQN SGSRPDKTNQ AVTQNSSSSS KPDNRREKSL GLLTQNFIKL FLCSNMKLIS  240
LDDAAKLLLG DGHGSTIMRT KVRRLYDIAN VLISMNLIEK THHTENRKPA FRWIGLRGKL  300
ENDSSTSLSK SNKRSFGTEI TNIDFKRSRL DSASVGKSMF GVKVQEPVQV KCESLGYEDE  360
KSMGHDSKVK TYEFGPFAPI NVSRVQTTEN KPKQVHDWEN LATVYRPQYQ NPALKELFGH  420
YKDAWHTWHS EVVKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A3e-358728710228Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867953.11e-148PREDICTED: E2F transcription factor-like E2FE isoform X2
RefseqXP_015879579.11e-148PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-111E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLF6GSX21e-139F6GSX2_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g07630.t011e-138(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.29e-99DP-E2F-like 1